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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66344060_66345596_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66344060 - 66345596
Intron Length:
1537

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGAGT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTCTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
ATACTGTTACTT
Flanking Amino Acid:
EPACAATFGKTIRQKFPLLT
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
75.8
39.8
Major BPS
83
0.82
0.8
82
24.9
Major PPT
80.2
0.68
0.7
78.2
29.9
Minor 5ss
33.3
-1.9
3.3
48.8
47
Minor BPS
45.2
-0.2
2.2
63.91
40.9

Associated Gene:

Gene:
RFX6
Ensembl Gene ID:
ENSAPLG00000002929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036876
66311311 - 66347855
36545
ENSAPLT00000002959
66311311 - 66347855
36545