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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66345721_66347421_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66345721 - 66347421
Intron Length:
1701

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAGGGCCG
5'SS Class:
major
3'SS Sequence:
TTTCTCTATACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGCTTTTTACT
Flanking Amino Acid:
KKKQTQLTLQWLEENYIVCE
Intron Amino Acid Position:
105

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
50.6
45.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
85.3
0.79
0.8
80.7
30.2
Minor 5ss
29.8
-2.3
3.4
35.8
42.1
Minor BPS
59.3
0.37
1.6
76.61
40.1

Associated Gene:

Gene:
RFX6
Ensembl Gene ID:
ENSAPLG00000002929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036876
66311311 - 66347855
36545
ENSAPLT00000002959
66311311 - 66347855
36545