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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66347579_66347698_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66347579 - 66347698
Intron Length:
120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCCCGGCTCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGGCAT
U12 Branch Point Sequence:
CTTCCCTTCCCC
Flanking Amino Acid:
GLPEPSAIKSELRAGSDSLS
Intron Amino Acid Position:
53

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
43
-0.4
1.5
46.5
47
Major PPT
64
0.32
0.9
56.1
33.6
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
42.7
-0.5
3.6
67.56
44.2

Associated Gene:

Gene:
RFX6
Ensembl Gene ID:
ENSAPLG00000002929
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002959
66311311 - 66347855
36545