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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6635450_6635532_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6635450 - 6635532
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTAAGGACA
5'SS Class:
major
3'SS Sequence:
CTTTTCCCTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAG
U12 Branch Point Sequence:
TTTTCCCTACAG
Flanking Amino Acid:
EFIREICKDDQEVNLEFGAV
Intron Amino Acid Position:
612

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1.3
72.3
39
Major BPS
67.4
0.43
1.5
65.3
43.7
Major PPT
86.7
0.83
0.7
80.8
24.6
Minor 5ss
33.9
-1.8
3.1
40.3
38.8
Minor BPS
53.3
-0
2.1
69.58
43.3

Associated Gene:

Gene:
PNPT1
Ensembl Gene ID:
ENSAPLG00000002885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045396
6621414 - 6637214
15801
ENSAPLT00000042722
6622294 - 6637214
14921
ENSAPLT00000002982
6617846 - 6637214
19369