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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6635589_6636087_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6635589 - 6636087
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TATTTTTGAAAT
Flanking Amino Acid:
AVYTATITEIRDSGVMIKLY
Intron Amino Acid Position:
630

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.2
0.78
1
77.1
33.2
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
81.2
0.7
0.9
72.5
42.4
Minor 5ss
31.7
-2.1
3.1
39.8
45.8
Minor BPS
62.7
0.48
1.5
79.07
36.5

Associated Gene:

Gene:
PNPT1
Ensembl Gene ID:
ENSAPLG00000002885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045396
6621414 - 6637214
15801
ENSAPLT00000042722
6622294 - 6637214
14921
ENSAPLT00000002982
6617846 - 6637214
19369