Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6636167_6636616_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6636167 - 6636616

Intron Length:

450

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGCAT

5'SS Class:

major

3'SS Sequence:

TTATCTGTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTGAA

U12 Branch Point Sequence:

TTTTTCTGAAAA

Flanking Amino Acid:

LHNSQLDQRKIKHPSALGLE

Intron Amino Acid Position:

657

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.5

0.7

71.5

39.9

Major BPS

82.1

0.8

71.6

36.4

Major PPT

77.1

0.61

0.9

69.9

41.2

Minor 5ss

32.5

-2

3.4

47.3

48.1

Minor BPS

70.4

0.64

1.5

81.5

Associated Gene:

Gene:

PNPT1

Ensembl Gene ID:

ENSAPLG00000002885

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045396

6621414 - 6637214

15801

ENSAPLT00000042722

6622294 - 6637214

14921

ENSAPLT00000002982

6617846 - 6637214

19369