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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66366312_66367649_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66366312 - 66367649
Intron Length:
1338

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTCTAAAAT
Flanking Amino Acid:
PIKPVIQNCAGFEIQVFLQT
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
77.5
32.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77
0.61
1
73
37.5
Minor 5ss
30.1
-2.3
2.6
28.4
36
Minor BPS
69.5
0.69
1.7
88.72
36.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024644
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030533
66365290 - 66370723
5434