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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6636665_6637058_F

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6636665 - 6637058
Intron Length:
394

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCTTAAA
U12 Branch Point Sequence:
GTTTTCTTAACA
Flanking Amino Acid:
LGLEVGQEIQVKYFGRDPTD
Intron Amino Acid Position:
673

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
90.3
22.3
Major BPS
60
0.25
1.3
63.9
40.2
Major PPT
81.5
0.71
0.9
77.5
35.6
Minor 5ss
45.5
-0.5
3
66.9
44.4
Minor BPS
85.7
1.12
0.9
87.92
29.1

Associated Gene:

Gene:
PNPT1
Ensembl Gene ID:
ENSAPLG00000002885
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045396
6621414 - 6637214
15801
ENSAPLT00000042722
6622294 - 6637214
14921
ENSAPLT00000002982
6617846 - 6637214
19369