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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66367954_66369900_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66367954 - 66369900
Intron Length:
1947

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTCCAT
U12 Branch Point Sequence:
TCTTCCATAACC
Flanking Amino Acid:
RLLALQLIPQVSPASSAEIL
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
65
0.37
1.3
76.1
38
Major PPT
74.6
0.55
0.7
73.2
25
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
75.8
0.79
1.6
83.65
35.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024644
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030533
66365290 - 66370723
5434