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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66385188_66385422_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66385188 - 66385422
Intron Length:
235

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
TTACTCTTAAGG
Flanking Amino Acid:
CFAVIASAKKAAARHESLTS
Intron Amino Acid Position:
256

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.8
24.1
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
89.3
0.88
0.6
84.8
22.8
Minor 5ss
30.6
-2.2
2.5
34.4
41.2
Minor BPS
60.6
0.19
1.7
65.33
42.3

Associated Gene:

Gene:
FAM162B
Ensembl Gene ID:
ENSAPLG00000025053
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030579
66381110 - 66385619
4510