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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66390320_66392137_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66390320 - 66392137
Intron Length:
1818

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTGTTTTGAATT
Flanking Amino Acid:
PYCALIEEAYGLDKIEFLQR
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
70.1
0.45
1
67.8
42.7
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
66.3
0.59
1.3
79.83
36.8

Associated Gene:

Gene:
KPNA5
Ensembl Gene ID:
ENSAPLG00000003395
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041817
66390132 - 66405977
15846