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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66390549_66392137_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66390549 - 66392137
Intron Length:
1589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
ATTTATCCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
AATTCCTTAATT
Flanking Amino Acid:
PYCALIEEAYGSFSMEEKTY
Intron Amino Acid Position:
553

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
69.9
0.45
0.9
68.8
37.5
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
86.4
1.22
0.9
91.95
30.1

Associated Gene:

Gene:
KPNA5
Ensembl Gene ID:
ENSAPLG00000003395
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003511
66390418 - 66405977
15560