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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66393307_66394044_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66393307 - 66394044
Intron Length:
738

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAGCTT
5'SS Class:
major
3'SS Sequence:
TTTTATCTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTATTAAAC
Flanking Amino Acid:
ITAGNRAQIQAVIDANIFPI
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1
68.5
42.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
82.5
0.73
0.7
81.7
29.9
Minor 5ss
42.1
-0.9
3.5
64.4
47
Minor BPS
62.6
0.37
1.7
73.75
36.2

Associated Gene:

Gene:
KPNA5
Ensembl Gene ID:
ENSAPLG00000003395
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041817
66390132 - 66405977
15846
ENSAPLT00000003511
66390418 - 66405977
15560