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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66400096_66400776_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66400096 - 66400776
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTGCTCAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGAGAT
U12 Branch Point Sequence:
TTCTGCTCAACA
Flanking Amino Acid:
LERNENYTLQFEAAWALTNI
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.4
1
0.7
83.9
30.3
Major BPS
64
0.35
1.3
60.7
45.9
Major PPT
74.5
0.55
0.9
69.8
35.4
Minor 5ss
38.4
-1.3
2.9
48.7
47.5
Minor BPS
61.2
0.35
2
75.44
42.2

Associated Gene:

Gene:
KPNA5
Ensembl Gene ID:
ENSAPLG00000003395
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041817
66390132 - 66405977
15846
ENSAPLT00000003511
66390418 - 66405977
15560