Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66408670_66409456_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

66408670 - 66409456

Intron Length:

787

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCGTAA

5'SS Class:

major

3'SS Sequence:

CTATCCCTAACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

CTATCCCTAACA

Flanking Amino Acid:

REKEEFKKLQRQYGLDSSGG

Intron Amino Acid Position:

105

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.5

0.41

1.2

Major BPS

90.4

0.7

90.2

19.3

Major PPT

71.5

0.49

0.9

66.2

34.2

Minor 5ss

40.5

-1.1

3.4

55.4

48.8

Minor BPS

68.9

0.59

1.7

77.22

39.4

Associated Gene:

Gene:

ZUP1

Ensembl Gene ID:

ENSAPLG00000004367

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045711

66405976 - 66414183

8208

ENSAPLT00000004512

66403792 - 66411703

7912