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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66411609_66411953_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66411609 - 66411953
Intron Length:
345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGCATC
5'SS Class:
major
3'SS Sequence:
GTTTTGAAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTGTTTTGAAAT
Flanking Amino Acid:
SRPPIYLQHQGHSRTVVGIE
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.3
76.2
39.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
62
0.27
1.1
61.2
43.7
Minor 5ss
39.4
-1.2
2.9
52.1
44.7
Minor BPS
54
0.2
1.6
69.15
42.1

Associated Gene:

Gene:
ZUP1
Ensembl Gene ID:
ENSAPLG00000004367
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045711
66405976 - 66414183
8208