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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66431376_66433894_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
66431376 - 66433894
Intron Length:
2519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TATCTTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTCATATTATCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96
1.08
0.7
85.2
32.2
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
83.4
0.75
0.8
78
34.7
Minor 5ss
36.3
-1.6
3.3
48.7
47.5
Minor BPS
51
0.11
1.9
73.37
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004407
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004520
66431210 - 66440490
9281