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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66434066_66435034_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66434066 - 66435034
Intron Length:
969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
CAATCTTCAAAC
Flanking Amino Acid:
DIFIATYPKSGTVWTQNILS
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
82.1
0.72
0.7
81.3
30.7
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
50.9
0.01
1.6
58.11
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004407
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004520
66431210 - 66440490
9281