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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66438082_66439115_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66438082 - 66439115
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAATGG
5'SS Class:
major
3'SS Sequence:
CTTCTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TGCTTCTCACCC
Flanking Amino Acid:
DKNKGRFLRKGTVGDWKNMM
Intron Amino Acid Position:
251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
65.8
40.9
Major BPS
85
0.87
0.8
85.6
23
Major PPT
85.2
0.79
0.7
84.2
23.7
Minor 5ss
36.7
-1.5
3.1
47.6
47.9
Minor BPS
50.1
-0
1.8
62.67
42.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004407
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004520
66431210 - 66440490
9281