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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6644090_6644889_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6644090 - 6644889
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGGAG
5'SS Class:
major
3'SS Sequence:
ATAACTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
ATCTTCATAACT
Flanking Amino Acid:
MSLLVRAEADGSLLLESKIN
Intron Amino Acid Position:
234

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
60.4
40.3
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
74.8
0.56
0.9
70.5
40.2
Minor 5ss
23.6
-3
3.3
29
43.5
Minor BPS
68.1
0.65
1.6
82.93
38.1

Associated Gene:

Gene:
PPP4R3B
Ensembl Gene ID:
ENSAPLG00000003697
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003828
6643390 - 6665757
22368