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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66444412_66445751_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66444412 - 66445751
Intron Length:
1340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTTC
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATTAT
U12 Branch Point Sequence:
TCTTGCATAAAA
Flanking Amino Acid:
DTSDIQFLEEAGNSVEVDES
Intron Amino Acid Position:
249

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.8
84.7
26.5
Major BPS
68.1
0.45
1
58.1
38.5
Major PPT
85.5
0.8
0.8
80.4
31.5
Minor 5ss
44.1
-0.6
2.9
61.1
43.8
Minor BPS
51.1
0.03
2.1
69.53
42.5

Associated Gene:

Gene:
RWDD1
Ensembl Gene ID:
ENSAPLG00000010404
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010840
66444299 - 66451812
7514