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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66445815_66446441_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66445815 - 66446441
Intron Length:
627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTATGATAT
5'SS Class:
major
3'SS Sequence:
TTTTAACTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTATTTTTAACT
Flanking Amino Acid:
DEQAGKNKLSGKQLFEMDHN
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1
70.7
35.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
80.3
0.68
0.8
74.3
35.2
Minor 5ss
46.2
-0.4
2.9
65.2
46
Minor BPS
83.1
1.12
0.9
92.23
29.9

Associated Gene:

Gene:
RWDD1
Ensembl Gene ID:
ENSAPLG00000010404
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010840
66444299 - 66451812
7514