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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66446575_66447778_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66446575 - 66447778
Intron Length:
1204

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GACTTAT
U12 Branch Point Sequence:
TTTTTTTTTTTT
Flanking Amino Acid:
KEREAEEEEKQRFHGTPVTI
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
78.7
29.9
Major BPS
65.9
0.39
1.2
57.6
41.3
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
42.8
-0.8
2.5
50.6
40.3
Minor BPS
43.9
-0.3
3.5
78.47
38.5

Associated Gene:

Gene:
RWDD1
Ensembl Gene ID:
ENSAPLG00000010404
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010840
66444299 - 66451812
7514