About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66450380_66451604_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66450380 - 66451604
Intron Length:
1225

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
TCTTTTTTAACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCTTTTTTAACA
Flanking Amino Acid:
LQSIYPDSFTVLSEKPTTFT
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
60.6
38.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
86.9
0.83
0.8
84.4
29
Minor 5ss
32.6
-2
3.3
43.1
44.2
Minor BPS
80
0.94
1
82.25
33.1

Associated Gene:

Gene:
RWDD1
Ensembl Gene ID:
ENSAPLG00000010404
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010840
66444299 - 66451812
7514