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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66462324_66466918_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66462324 - 66466918
Intron Length:
4595

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGATAT
5'SS Class:
major
3'SS Sequence:
CTTTTTCTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CATTTTTTATTT
Flanking Amino Acid:
PGRKQDSQKISRELFVLTYG
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75
0.59
1
73.2
31.7
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.8
0.74
0.9
80.6
31.4
Minor 5ss
41.5
-0.9
3.2
58
41.7
Minor BPS
58.5
0.34
1.6
71.82
40.2

Associated Gene:

Gene:
TRAPPC3L
Ensembl Gene ID:
ENSAPLG00000010373
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010803
66462282 - 66470079
7798