About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66467017_66469955_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66467017 - 66469955
Intron Length:
2939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
CTTTTTTGAATG
Flanking Amino Acid:
DEDVNTCLDRMGYAIGIRLI
Intron Amino Acid Position:
47

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
86.5
28.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
74.7
0.56
0.8
67
35.5
Minor 5ss
40.8
-1
2.8
57.5
39.6
Minor BPS
59.2
0.15
1.5
63.05
39.8

Associated Gene:

Gene:
TRAPPC3L
Ensembl Gene ID:
ENSAPLG00000010373
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010803
66462282 - 66470079
7798