About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66483611_66485605_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66483611 - 66485605
Intron Length:
1995

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGAAAG
5'SS Class:
major
3'SS Sequence:
ATCTTTTTGTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTTTTCTCATCT
Flanking Amino Acid:
RWCTLHTEFLWYDASLRSVP
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
66
39.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
80
0.68
1
80.7
36.3
Minor 5ss
39.1
-1.2
2.8
45.5
43.8
Minor BPS
66.4
0.59
1.8
87.9
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030127
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042482
66483492 - 66488230
4739