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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66530642_66542150_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
66530642 - 66542150
Intron Length:
11509

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGATTTT
5'SS Class:
major
3'SS Sequence:
TCTTTATTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCTTTCTTTATT
Flanking Amino Acid:
YMERMAAQPSWLVKDAPWDE
Intron Amino Acid Position:
185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
73.9
37.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.6
0.67
1
76.4
36.7
Minor 5ss
44.2
-0.6
3.3
63.2
43.8
Minor BPS
69
0.68
1.6
83.03
38.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010250
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010672
66519293 - 66542704
23412
ENSAPLT00000041702
66519293 - 66542619
23327