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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66542417_66542538_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
66542417 - 66542538
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGTGTTTT
5'SS Class:
major
3'SS Sequence:
CTACTTTTCCAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCCCAT
U12 Branch Point Sequence:
CATGCTCTACTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
0.9
79.4
29.5
Major BPS
63.5
0.33
1.2
72.5
34.6
Major PPT
68.1
0.41
1
67
38.1
Minor 5ss
48.5
-0.1
2.7
66.5
39
Minor BPS
44.9
-0.3
2
60.86
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010250
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041702
66519293 - 66542619
23327