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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66567307_66580273_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66567307 - 66580273
Intron Length:
12967

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTCTATCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAT
U12 Branch Point Sequence:
ATATTTCTATCT
Flanking Amino Acid:
IAIPSLEAIADLPLDYRFTR
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
79.3
0.73
1.1
77.9
34.9
Major PPT
87.1
0.83
0.7
84.8
29.7
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
49.4
0.03
1.9
71.41
39.6

Associated Gene:

Gene:
NT5DC1
Ensembl Gene ID:
ENSAPLG00000010010
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033318
66567188 - 66713594
146407