Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6658189_6658582_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6658189 - 6658582

Intron Length:

394

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAC|GTAAGTAAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTGAA

U12 Branch Point Sequence:

CCATGTATAATT

Flanking Amino Acid:

VMQEAQQSDDDILLINVVIE

Intron Amino Acid Position:

597

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

1.2

83.2

30.8

Major BPS

79.4

0.73

0.9

69.6

37.5

Major PPT

98.2

1.08

0.5

92.3

26.6

Minor 5ss

36.4

-1.5

2.7

41.6

38.3

Minor BPS

46.3

-0.2

60.76

43.7

Associated Gene:

Gene:

PPP4R3B

Ensembl Gene ID:

ENSAPLG00000003697

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000003828

6643390 - 6665757

22368