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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6658715_6659455_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6658715 - 6659455
Intron Length:
741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ATGTTTGTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
CAGTATTTAATA
Flanking Amino Acid:
DPENMLATANKTEKSEFLNF
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
79
29.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.9
0.58
0.9
74
41
Minor 5ss
35.2
-1.7
3
45.1
42.9
Minor BPS
57.3
0.23
1.5
60.92
39.7

Associated Gene:

Gene:
PPP4R3B
Ensembl Gene ID:
ENSAPLG00000003697
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003828
6643390 - 6665757
22368