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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6659559_6660671_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6659559 - 6660671
Intron Length:
1113

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTGTTTATCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTCTGTTTATCA
Flanking Amino Acid:
ANTSEDKCEKDAVVGSTKSN
Intron Amino Acid Position:
675

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
81.4
33
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81.4
0.71
0.9
81.3
35
Minor 5ss
42.7
-0.8
3.4
64.6
46.7
Minor BPS
55
0.15
2
70.42
42.6

Associated Gene:

Gene:
PPP4R3B
Ensembl Gene ID:
ENSAPLG00000003697
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003828
6643390 - 6665757
22368