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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6660714_6661357_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6660714 - 6661357
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TGTGTCTTAATG
Flanking Amino Acid:
GSTKSNTICPDNYQTAQLLA
Intron Amino Acid Position:
689

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
89.6
24.1
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
88.5
0.87
0.6
85
22.7
Minor 5ss
46.3
-0.4
2.8
64.1
41.5
Minor BPS
66.8
0.39
1.5
67.31
41

Associated Gene:

Gene:
PPP4R3B
Ensembl Gene ID:
ENSAPLG00000003697
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003828
6643390 - 6665757
22368