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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6662374_6663506_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6662374 - 6663506
Intron Length:
1133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGTTAG
5'SS Class:
major
3'SS Sequence:
TCTTCTTACACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTCTTCTTACAC
Flanking Amino Acid:
VIELFEFIRVEDIKSLIAHI
Intron Amino Acid Position:
799

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
67.8
39.9
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
80.2
0.68
0.8
76.1
31.4
Minor 5ss
38.6
-1.3
3
45.6
44.9
Minor BPS
60.1
0.3
1.7
70.75
40.8

Associated Gene:

Gene:
PPP4R3B
Ensembl Gene ID:
ENSAPLG00000003697
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003828
6643390 - 6665757
22368