Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66706306_66707739_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

66706306 - 66707739

Intron Length:

1434

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGCTATA

5'SS Class:

major

3'SS Sequence:

TTTGTTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

GTAGTGATGATT

Flanking Amino Acid:

SAVRGMLSRSGKYYLYDNYF

Intron Amino Acid Position:

122

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

75.5

0.6

1.2

38.6

Major BPS

81.6

0.78

0.8

24.9

Major PPT

93.4

0.98

0.7

92.3

26.6

Minor 5ss

43.5

-0.7

59.5

45.1

Minor BPS

40.1

-0.6

2.2

56.41

40.4

Associated Gene:

Gene:

NT5DC1

Ensembl Gene ID:

ENSAPLG00000010010

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033318

66567188 - 66713594

146407

ENSAPLT00000010430

66578884 - 66713594

134711