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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66707847_66709446_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
66707847 - 66709446
Intron Length:
1600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATACTG
5'SS Class:
major
3'SS Sequence:
ATGCATCAAATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
AATGCATCAAAT
Flanking Amino Acid:
LKLAEDGTVLRASHGTRSMT
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.3
42.6
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
54
0.09
1
48.7
38.8
Minor 5ss
35.6
-1.6
3.2
48
47.5
Minor BPS
47.4
-0.1
2
67
42.8

Associated Gene:

Gene:
NT5DC1
Ensembl Gene ID:
ENSAPLG00000010010
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033318
66567188 - 66713594
146407
ENSAPLT00000010430
66578884 - 66713594
134711