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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66711270_66712810_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
66711270 - 66712810
Intron Length:
1541

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTTTTCCATC
Flanking Amino Acid:
CRYHLPQSERLIYDSFAQYL
Intron Amino Acid Position:
32

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
65.8
40.2
Major BPS
83
0.82
0.8
82
24.9
Major PPT
79.3
0.66
0.8
73.8
30.1
Minor 5ss
27.1
-2.6
2.9
24.3
36.8
Minor BPS
50.2
-0
1.9
69.41
36.9

Associated Gene:

Gene:
NT5DC1
Ensembl Gene ID:
ENSAPLG00000010010
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033318
66567188 - 66713594
146407
ENSAPLT00000010430
66578884 - 66713594
134711