About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66720296_66725272_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66720296 - 66725272
Intron Length:
4977

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGATTAAA
5'SS Class:
major
3'SS Sequence:
TGCTTATTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CCTTGCTTATTC
Flanking Amino Acid:
ICKLQKQNGCVKEHEKEDKI
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.4
0.6
1
73.9
31
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
79.2
0.66
0.9
77
36.2
Minor 5ss
29.8
-2.3
2.6
30.1
36.8
Minor BPS
49.7
-0
2
61.27
45

Associated Gene:

Gene:
FRK
Ensembl Gene ID:
ENSAPLG00000009906
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010323
66720259 - 66783322
63064