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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66761800_66762492_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
66761800 - 66762492
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTA|GTGCTTGGA
5'SS Class:
weak_major
3'SS Sequence:
TTTGTTTTACCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
AATTTCTAAATT
Flanking Amino Acid:
YSTNSDGLCVVQIPNTFDLT
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.4
0.06
1.1
47.9
36.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
83.5
0.75
0.9
78
40.1
Minor 5ss
27.5
-2.6
3.2
31.9
37.8
Minor BPS
65.3
0.56
1.6
78.94
37.5

Associated Gene:

Gene:
FRK
Ensembl Gene ID:
ENSAPLG00000009906
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010323
66720259 - 66783322
63064