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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66772739_66777591_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66772739 - 66777591
Intron Length:
4853

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTAAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTCTTTTTAAAT
Flanking Amino Acid:
KYGSLLEYLQKDAGYKILLK
Intron Amino Acid Position:
322

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
80.8
33.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
75.6
0.58
0.9
74.1
34.4
Minor 5ss
44.7
-0.6
2.9
58
40.7
Minor BPS
72.7
0.79
1.3
84.29
36.6

Associated Gene:

Gene:
FRK
Ensembl Gene ID:
ENSAPLG00000009906
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010323
66720259 - 66783322
63064