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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6677922_6678901_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6677922 - 6678901
Intron Length:
980

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAAAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTATGTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATGTTACA
Flanking Amino Acid:
EEMKILREVLRKSKEEYDME
Intron Amino Acid Position:
163

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
77.5
30.5
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
85.9
0.81
0.9
80.1
37.1
Minor 5ss
33.1
-1.9
3
42.8
44.4
Minor BPS
47.9
-0.1
2.4
71.98
40

Associated Gene:

Gene:
CFAP36
Ensembl Gene ID:
ENSAPLG00000026682
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019269
6677849 - 6685886
8038