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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_66780175_66783113_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66780175 - 66783113
Intron Length:
2939

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCATT
5'SS Class:
strong_major
3'SS Sequence:
GAATCATTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TCTTCCTTGAAT
Flanking Amino Acid:
ILTYGKTPYAGLTGQQVIQM
Intron Amino Acid Position:
435

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
0.9
83.5
35
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
62.3
0.28
1.1
55.4
43.3
Minor 5ss
45.5
-0.5
2.9
63.6
42
Minor BPS
77.7
0.95
1.3
88.47
36.5

Associated Gene:

Gene:
FRK
Ensembl Gene ID:
ENSAPLG00000009906
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010323
66720259 - 66783322
63064