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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67019556_67030730_F

Intron Information:

Intron Rank:
129115
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
67019556 - 67030730
Intron Length:
11175

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTCAGAA
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTAAA
U12 Branch Point Sequence:
GTCTCTGTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.3
0.17
1.3
56
37
Major BPS
62.9
0.32
1.2
65.3
38.6
Major PPT
100
1.12
0.4
100
0
Minor 5ss
37.7
-1.4
3.2
47.7
47.8
Minor BPS
50.1
0
2.1
64.9
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019458
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034361
67017174 - 67031000
13827