Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6711917_6712014_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6711917 - 6712014

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTAAGCGTT

5'SS Class:

strong_major

3'SS Sequence:

GGTTGTGTTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTCAT

U12 Branch Point Sequence:

GTCATGGTGATG

Flanking Amino Acid:

QFMSSPLVTWVKTFGPLAGR

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.75

76.2

39.9

Major BPS

67.1

0.42

1.4

71.4

45.1

Major PPT

69.6

0.44

65.8

45.3

Minor 5ss

41.8

-0.9

3.5

56.2

Minor BPS

35.6

-1.2

2.4

38.44

39.3

Associated Gene:

Gene:

CCDC88A

Ensembl Gene ID:

ENSAPLG00000004375

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004570

6711854 - 6787795

75942

ENSAPLT00000047511

6711854 - 6787795

75942

ENSAPLT00000046397

6711854 - 6740555

28702

ENSAPLT00000038946

6711854 - 6787795

75942

ENSAPLT00000028128

6711854 - 6776952

65099