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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6731441_6737406_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6731441 - 6737406
Intron Length:
5966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTAACTTTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTTTAATTAACT
Flanking Amino Acid:
LVKQIKTYYQETLQQLIVMS
Intron Amino Acid Position:
92

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
1.2
87
30
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
78.2
0.63
0.9
72.9
37.1
Minor 5ss
32.8
-2
2.7
42.5
44.3
Minor BPS
74.8
0.86
1.7
94.75
31.4

Associated Gene:

Gene:
CCDC88A
Ensembl Gene ID:
ENSAPLG00000004375
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046397
6711854 - 6740555
28702
ENSAPLT00000038946
6711854 - 6787795
75942
ENSAPLT00000028128
6711854 - 6776952
65099
ENSAPLT00000004570
6711854 - 6787795
75942