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Intron Name: Anas_platyrhynchos_platyrhynchos_3_6737477_6743497_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

6737477 - 6743497

Intron Length:

6021

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTAAGTTTA

5'SS Class:

strong_major

3'SS Sequence:

TGTCAGAAAAAAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TATTCAT

U12 Branch Point Sequence:

TGTATATTCATT

Flanking Amino Acid:

VLIIGRNPFSEEFIESIQCL

Intron Amino Acid Position:

115

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.4

0.95

0.8

85.9

25.4

Major BPS

92.2

1.05

0.7

91.9

19.6

Major PPT

47.5

-0.1

1.2

40.2

Minor 5ss

43.9

-0.7

2.8

43.6

Minor BPS

47.8

-0

70.19

40.9

Associated Gene:

Gene:

CCDC88A

Ensembl Gene ID:

ENSAPLG00000004375

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038946

6711854 - 6787795

75942

ENSAPLT00000028128

6711854 - 6776952

65099

ENSAPLT00000004570

6711854 - 6787795

75942