About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_6745777_6749182_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6745777 - 6749182
Intron Length:
3406

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTACA
5'SS Class:
major
3'SS Sequence:
CGTATTTATTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCATGTTTAACT
Flanking Amino Acid:
KAKIRRLRQELEEKTEQLLD
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.6
0.51
1.1
70.1
35.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
71.9
0.49
0.9
70.1
40.4
Minor 5ss
33.5
-1.9
2.7
44.7
42.7
Minor BPS
66.8
0.6
1.8
80.24
42

Associated Gene:

Gene:
CCDC88A
Ensembl Gene ID:
ENSAPLG00000004375
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038946
6711854 - 6787795
75942
ENSAPLT00000028128
6711854 - 6776952
65099
ENSAPLT00000004570
6711854 - 6787795
75942