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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67478644_67479848_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
67478644 - 67479848
Intron Length:
1205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CCCAATTTTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
GTTTTCCCAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
0.9
79.6
35.4
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
71.6
0.49
0.9
68.5
36.9
Minor 5ss
34.9
-1.7
3.1
47.1
42.6
Minor BPS
55.2
0.24
1.9
77.57
38.8

Associated Gene:

Gene:
HS3ST5
Ensembl Gene ID:
ENSAPLG00000006908
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007159
67478430 - 67530921
52492