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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_67479987_67524810_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
67479987 - 67524810
Intron Length:
44824

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTGTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
GTTTTCTGATGA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
89.8
22.2
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
83
0.74
0.8
77.2
31.6
Minor 5ss
39.1
-1.2
2.8
51.7
39.1
Minor BPS
48.4
-0.1
2
64.5
41.8

Associated Gene:

Gene:
HS3ST5
Ensembl Gene ID:
ENSAPLG00000006908
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007159
67478430 - 67530921
52492